Motif J4_64075.3 Version J4_64075.3 of this group appears in releases 3.87 to 3.90

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3	break		4		5	break		6		7		8		9		10		11		12		13		14		15	break		16		17		18		19		20	1-18	1-20	2-19	3-4	5-6	7-11	12-13	13-18	14-17	15-16	18-20
1	J4_4V9F_008	4V9F	0.3791	1	0	LSU rRNA	C	1889	U	1890	G	1891	*	C	1946	G	1947	*	C	1965	U	1966	U	1967	A	1968	A	1969	G	1970	G	1971	U	1972	A	1973	G	1974	*	U	2008	G	2009	A	2010	A	2011	G	2013	tsS	cWW	cWH	cWW	cWW	tWW	cSH	tWH	tHS	cWW	cSs
2	J4_5J7L_026	5J7L	0.0000	1	DA	LSU rRNA	C	1833	U	1834	2MG	1835	*	C	1905	G	1906	*	C	1924	C	1925	U	1926	A	1927	A	1928	G	1929	G	1930	U	1931	A	1932	G	1933	*	C	1967	G	1968	A	1969	A	1970	G	1972	tsS	cWW	cWH	cWW	cWW	tWW	cSH	tWH	tHS	cWW	cSs
3	J4_8VTW_008	8VTW	0.0798	1	1A	LSU rRNA	U	1833	U	1834	G	1835	*	C	1905	G	1906	*	C	1924	C	1925	U	1926	A	1927	A	1928	G	1929	G	1930	U	1931	A	1932	G	1933	*	C	1967	G	1968	A	1969	A	1970	A	1972	tsS	cWW	cWH	cWW	cWW	tWW	cSH	tWH	tHS	cWW
4	J4_5TBW_007	5TBW	0.1264	1	1	LSU rRNA	C	2192	U	2193	G	2194	*	C	2248	G	2249	*	C	2267	U	2268	U	2269	A	2270	A	2271	G	2272	G	2273	U	2274	A	2275	G	2276	*	U	2310	G	2311	A	2312	A	2313	G	2315	tsS	cWW	cWH	cWW	cWW	ntSW	cSH	tWH	tHS	cWW	cSs

3D structures

Complete motif including flanking bases

Sequence	Counts
CUGCGCUUAAGGUAG*UGAAUG	2
CU2MGCGCCUAAGGUAG*CGAAUG	1
UUGCGCCUAAGGUAG*CGAAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
U*UUAAGGUAGAAU	2
U*CUAAGGUAGAAU	1
U*CUAAGGUAGAAA	1

Release history

Release	3.87	3.88	3.89	3.90
Date	2024-08-14	2024-09-11	2024-10-09	2024-11-06
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (4)
Basepair signature: cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Heat map statistics: Min 0.08 | Avg 0.20 | Max 0.44

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Coloring options: Nucleotide numbers

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