J4_8VTW_014

3D structure

PDB id

8VTW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with macrolone MCX-128 and protein Y at 2.35A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8VTW|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTW_014 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0587

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8VTW|1|2A|C|268
8VTW|1|2A|U|269
*
8VTW|1|2A|G|370
8VTW|1|2A|A|371
8VTW|1|2A|G|372
8VTW|1|2A|U|373
8VTW|1|2A|A|374
8VTW|1|2A|C|375
*
8VTW|1|2A|G|399
8VTW|1|2A|G|400
8VTW|1|2A|A|401
8VTW|1|2A|A|402
8VTW|1|2A|U|403
8VTW|1|2A|C|404
8VTW|1|2A|U|405
8VTW|1|2A|G|406
*
8VTW|1|2A|U|421
8VTW|1|2A|A|422
8VTW|1|2A|A|423
8VTW|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9