J4_8VTY_001

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8VTY|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTY_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0583

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8VTY|1|1A|C|268
8VTY|1|1A|U|269
*
8VTY|1|1A|G|370
8VTY|1|1A|A|371
8VTY|1|1A|G|372
8VTY|1|1A|U|373
8VTY|1|1A|A|374
8VTY|1|1A|C|375
*
8VTY|1|1A|G|399
8VTY|1|1A|G|400
8VTY|1|1A|A|401
8VTY|1|1A|A|402
8VTY|1|1A|U|403
8VTY|1|1A|C|404
8VTY|1|1A|U|405
8VTY|1|1A|G|406
*
8VTY|1|1A|U|421
8VTY|1|1A|A|422
8VTY|1|1A|A|423
8VTY|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9