J4_8VTY_024

3D structure

PDB id

8VTY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with ciprofloxacin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

8VTY|1|2a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VTY_024 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0516

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8VTY|1|2a|G|115
8VTY|1|2a|A|116
8VTY|1|2a|G|117
8VTY|1|2a|U|118
8VTY|1|2a|A|119
8VTY|1|2a|A|120
8VTY|1|2a|C|121
8VTY|1|2a|G|122
*
8VTY|1|2a|U|239
8VTY|1|2a|C|240
*
8VTY|1|2a|G|286
8VTY|1|2a|U|287
8VTY|1|2a|A|288
8VTY|1|2a|G|289
*
8VTY|1|2a|C|311
8VTY|1|2a|C|312

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17