J4_8VUP_001
3D structure
- PDB id
- 8VUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CC*GAGUAG*UGAAUAUG*CAAG
- Length
- 20 nucleotides
- Bulged bases
- 8VUP|1|1|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VUP_001 not in the Motif Atlas
- Homologous match to J4_8B0X_004
- Geometric discrepancy: 0.2139
- The information below is about J4_8B0X_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.3
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
8VUP|1|1|C|268
8VUP|1|1|C|269
*
8VUP|1|1|G|370
8VUP|1|1|A|371
8VUP|1|1|G|372
8VUP|1|1|U|373
8VUP|1|1|A|374
8VUP|1|1|G|375
*
8VUP|1|1|U|399
8VUP|1|1|G|400
8VUP|1|1|A|401
8VUP|1|1|A|402
8VUP|1|1|U|403
8VUP|1|1|A|404
8VUP|1|1|U|405
8VUP|1|1|G|406
*
8VUP|1|1|C|421
8VUP|1|1|A|422
8VUP|1|1|A|423
8VUP|1|1|G|424
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain G
- Large ribosomal subunit protein bL9
- Chain X
- 50S ribosomal protein L28
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