J4_8VUP_001

3D structure

PDB id

8VUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8VUP|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VUP|1|1|C|268
8VUP|1|1|C|269
*
8VUP|1|1|G|370
8VUP|1|1|A|371
8VUP|1|1|G|372
8VUP|1|1|U|373
8VUP|1|1|A|374
8VUP|1|1|G|375
*
8VUP|1|1|U|399
8VUP|1|1|G|400
8VUP|1|1|A|401
8VUP|1|1|A|402
8VUP|1|1|U|403
8VUP|1|1|A|404
8VUP|1|1|U|405
8VUP|1|1|G|406
*
8VUP|1|1|C|421
8VUP|1|1|A|422
8VUP|1|1|A|423
8VUP|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein bL9

Chain X

50S ribosomal protein L28