3D structure

PDB id
8VUP (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome with unmodified tRNAPro(GGG) in the e*/E conformation on a slippery CCC-C codon
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
8VUP|1|1|G|1271, 8VUP|1|1|A|1272, 8VUP|1|1|U|1273, 8VUP|1|1|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8VUP|1|1|C|1270
8VUP|1|1|G|1271
8VUP|1|1|A|1272
8VUP|1|1|U|1273
8VUP|1|1|A|1274
8VUP|1|1|A|1275
8VUP|1|1|A|1276
*
8VUP|1|1|U|1294
8VUP|1|1|C|1295
*
8VUP|1|1|G|1645
8VUP|1|1|C|1646
8VUP|1|1|U|1647
8VUP|1|1|U|1648
*
8VUP|1|1|A|2009
8VUP|1|1|G|2010

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain N
Large ribosomal subunit protein bL17
Chain S
50S ribosomal protein L22
Chain b
50S ribosomal protein L32

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.5787 s