J4_8VVP_014
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 8VVP|1|WA|A|4236
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VVP_014 not in the Motif Atlas
- Homologous match to J4_9H3G_010
- Geometric discrepancy: 0.1558
- The information below is about J4_9H3G_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.4
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VVP|1|WA|C|4233
8VVP|1|WA|U|4234
8VVP|1|WA|A|4235
8VVP|1|WA|A|4236
8VVP|1|WA|G|4237
*
8VVP|1|WA|U|4291
8VVP|1|WA|U|4292
8VVP|1|WA|G|4293
8VVP|1|WA|A|4294
8VVP|1|WA|U|4295
*
8VVP|1|WA|A|4319
8VVP|1|WA|C|4320
8VVP|1|WA|C|4321
*
8VVP|1|WA|G|4330
8VVP|1|WA|G|4331
8VVP|1|WA|G|4332
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain AA
- L29
- Chain D
- uL18
- Chain NA
- eL42
- Chain S
- eL21
Coloring options: