Motif J4_59590.4 Version J4_59590.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | break | 13 | 14 | 15 | 1-15 | 3-6 | 3-8 | 4-5 | 7-11 | 9-10 | 12-13 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_8OI5_008 | 8OI5 | 0.1008 | 1 | 1 | LSU rRNA | C | 2626 | U | 2627 | A | 2628 | G | 2630 | * | U | 2684 | U | 2685 | G | 2686 | A | 2687 | U | 2688 | * | A | 2712 | C | 2713 | C | 2714 | * | G | 2723 | U | 2724 | G | 2725 | cWW | tWW | ntHH | cWW | ncHW | cWW | cWW |
| 2 | J4_9PN5_008 | 9PN5 | 0.0821 | 1 | A1 | LSU rRNA | C | 2654 | U | 2655 | A | 2656 | G | 2658 | * | U | 2712 | U | 2713 | G | 2714 | A | 2715 | U | 2716 | * | A | 2740 | C | 2741 | C | 2742 | * | G | 2751 | U | 2752 | G | 2753 | cWW | tWW | tHH | cWW | ncHW | cWW | cWW |
| 3 | J4_9SUM_009 | 9SUM | 0.0000 | 1 | A | LSU rRNA | C | 2554 | U | 2555 | A | 2556 | G | 2558 | * | U | 2612 | U | 2613 | G | 2614 | A | 2615 | U | 2616 | * | A | 2640 | C | 2641 | C | 2642 | * | G | 2651 | U | 2652 | G | 2653 | cWW | tWW | tHH | cWW | cWW | cWW | cWW |
| 4 | J4_9H3G_010 | 9H3G | 0.0561 | 1 | A | LSU rRNA | C | 2653 | U | 2654 | A | 2655 | G | 2657 | * | U | 2711 | U | 2712 | G | 2713 | A | 2714 | U | 2715 | * | A | 2739 | C | 2740 | C | 2741 | * | G | 2750 | U | 2751 | G | 2752 | cWW | tWW | tHH | cWW | cWW | cWW | cWW |
| 5 | J4_8GLP_012 | 8GLP | 0.1987 | 1 | L5 | LSU rRNA | C | 4231 | U | 4232 | A | 4233 | G | 4235 | * | U | 4289 | U | 4290 | G | 4291 | A | 4292 | PSU | 4293 | * | A | 4317 | C | 4318 | C | 4319 | * | G | 4328 | G | 4329 | G | 4330 | cWW | tWW | tHH | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAAG*UUGAU*ACC*GUG | 4 |
| CUAAG*UUGAPSU*ACC*GGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAA*UGA*C*U | 4 |
| UAA*UGA*C*G | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.11 | Max 0.22
Coloring options: