J4_8VVP_016

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

8VVP|1|ZA|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVP|1|ZA|C|98
8VVP|1|ZA|A|99
8VVP|1|ZA|U|100
8VVP|1|ZA|U|101
8VVP|1|ZA|A|102
8VVP|1|ZA|A|103
8VVP|1|ZA|A|104
8VVP|1|ZA|U|105
8VVP|1|ZA|C|106
*
8VVP|1|ZA|G|355
8VVP|1|ZA|C|356
8VVP|1|ZA|C|357
*
8VVP|1|ZA|G|405
8VVP|1|ZA|U|406
8VVP|1|ZA|G|407
8VVP|1|ZA|A|408
8VVP|1|ZA|C|409
*
8VVP|1|ZA|G|431
8VVP|1|ZA|G|432

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

S4

Chain IB

S8

Chain LB

S11

Chain XB

S23