J4_9H3G_013
3D structure
- PDB id
- 9H3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.82 Å
Loop
- Sequence
- CAU(PSU)AAAUC*GCC*G(PSU)GAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 9H3G|1|h1|G|361
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.3
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9H3G|1|h1|C|100
9H3G|1|h1|A|101
9H3G|1|h1|U|102
9H3G|1|h1|PSU|103
9H3G|1|h1|A|104
9H3G|1|h1|A|105
9H3G|1|h1|A|106
9H3G|1|h1|U|107
9H3G|1|h1|C|108
*
9H3G|1|h1|G|309
9H3G|1|h1|C|310
9H3G|1|h1|C|311
*
9H3G|1|h1|G|359
9H3G|1|h1|PSU|360
9H3G|1|h1|G|361
9H3G|1|h1|A|362
9H3G|1|h1|C|363
*
9H3G|1|h1|G|385
9H3G|1|h1|G|386
Current chains
- Chain h1
- Ribosomal RNA 18S
Nearby chains
- Chain Aa
- Small ribosomal subunit protein eS8z
- Chain Ja
- Small ribosomal subunit protein eS4x
- Chain Va
- Small ribosomal subunit protein uS12y
- Chain Xa
- Small ribosomal subunit protein uS17z
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