J4_8VVQ_004

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

8VVQ|1|WA|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVQ|1|WA|C|111
8VVQ|1|WA|C|112
*
8VVQ|1|WA|G|278
8VVQ|1|WA|A|279
8VVQ|1|WA|G|280
8VVQ|1|WA|U|281
8VVQ|1|WA|C|282
8VVQ|1|WA|G|283
*
8VVQ|1|WA|C|304
8VVQ|1|WA|A|305
8VVQ|1|WA|A|306
8VVQ|1|WA|A|307
8VVQ|1|WA|G|308
8VVQ|1|WA|C|309
8VVQ|1|WA|G|310
*
8VVQ|1|WA|U|327
8VVQ|1|WA|A|328
8VVQ|1|WA|A|329
8VVQ|1|WA|G|330

Current chains

Chain WA

28S rRNA

Nearby chains

Chain GA

L35

Chain HA

L36

Chain K

eL13

Chain M

L15