J4_8VVQ_005

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8VVQ|1|WA|C|216, 8VVQ|1|WA|C|217, 8VVQ|1|WA|A|218, 8VVQ|1|WA|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVQ|1|WA|C|196
8VVQ|1|WA|A|197
8VVQ|1|WA|A|198
8VVQ|1|WA|G|199
*
8VVQ|1|WA|C|215
8VVQ|1|WA|C|216
8VVQ|1|WA|C|217
8VVQ|1|WA|A|218
8VVQ|1|WA|G|219
8VVQ|1|WA|C|220
8VVQ|1|WA|C|221
8VVQ|1|WA|C|222
*
8VVQ|1|WA|G|226
8VVQ|1|WA|A|227
8VVQ|1|WA|C|228
*
8VVQ|1|WA|G|240
8VVQ|1|WA|G|241
8VVQ|1|WA|U|242
8VVQ|1|WA|A|243
8VVQ|1|WA|G|244

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain X

L26