J4_8VVQ_006

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAGGGAG*CGCGCCGG*CACGGGG

Length

24 nucleotides

Bulged bases

8VVQ|1|WA|G|964, 8VVQ|1|WA|C|978, 8VVQ|1|WA|C|1282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVQ|1|WA|C|713
8VVQ|1|WA|C|714
*
8VVQ|1|WA|G|960
8VVQ|1|WA|A|961
8VVQ|1|WA|G|962
8VVQ|1|WA|G|963
8VVQ|1|WA|G|964
8VVQ|1|WA|A|965
8VVQ|1|WA|G|966
*
8VVQ|1|WA|C|976
8VVQ|1|WA|G|977
8VVQ|1|WA|C|978
8VVQ|1|WA|G|979
8VVQ|1|WA|C|980
8VVQ|1|WA|C|981
8VVQ|1|WA|G|982
8VVQ|1|WA|G|983
*
8VVQ|1|WA|C|1280
8VVQ|1|WA|A|1281
8VVQ|1|WA|C|1282
8VVQ|1|WA|G|1283
8VVQ|1|WA|G|1284
8VVQ|1|WA|G|1285
8VVQ|1|WA|G|1286

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain DA

L32

Chain E

L6

Chain F

uL30