J4_8VVQ_010

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8VVQ|1|WA|A|2698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVQ|1|WA|G|2620
8VVQ|1|WA|G|2621
*
8VVQ|1|WA|U|2639
8VVQ|1|WA|G|2640
8VVQ|1|WA|U|2641
8VVQ|1|WA|G|2642
8VVQ|1|WA|A|2643
8VVQ|1|WA|A|2644
*
8VVQ|1|WA|U|2694
8VVQ|1|WA|G|2695
8VVQ|1|WA|G|2696
8VVQ|1|WA|A|2697
8VVQ|1|WA|A|2698
8VVQ|1|WA|A|2699
8VVQ|1|WA|G|2700
*
8VVQ|1|WA|U|2720
8VVQ|1|WA|C|2721

Current chains

Chain WA

28S rRNA

Nearby chains

Chain FA

L34

Chain JA

eL38

Chain Q

eL19

Chain T

eL22