J4_8VVQ_013
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAAG*UUG*CC*GGG
- Length
- 13 nucleotides
- Bulged bases
- 8VVQ|1|WA|A|4236
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VVQ_013 not in the Motif Atlas
- Homologous match to J4_8GLP_011
- Geometric discrepancy: 0.0596
- The information below is about J4_8GLP_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVQ|1|WA|C|4233
8VVQ|1|WA|U|4234
8VVQ|1|WA|A|4235
8VVQ|1|WA|A|4236
8VVQ|1|WA|G|4237
*
8VVQ|1|WA|U|4291
8VVQ|1|WA|U|4292
8VVQ|1|WA|G|4293
*
8VVQ|1|WA|C|4320
8VVQ|1|WA|C|4321
*
8VVQ|1|WA|G|4330
8VVQ|1|WA|G|4331
8VVQ|1|WA|G|4332
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain D
- uL18
- Chain NA
- eL42
- Chain S
- eL21
Coloring options: