J4_8VVR_012

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVR|1|WA|G|3636
8VVR|1|WA|A|3637
8VVR|1|WA|C|3638
8VVR|1|WA|U|3639
8VVR|1|WA|G|3640
*
8VVR|1|WA|C|3652
8VVR|1|WA|A|3653
8VVR|1|WA|A|3654
8VVR|1|WA|A|3655
8VVR|1|WA|G|3656
*
8VVR|1|WA|U|3692
8VVR|1|WA|G|3693
8VVR|1|WA|A|3694
8VVR|1|WA|U|3695
8VVR|1|WA|U|3696
*
8VVR|1|WA|A|3823
8VVR|1|WA|U|3824
8VVR|1|WA|G|3825
8VVR|1|WA|A|3826
8VVR|1|WA|A|3827
8VVR|1|WA|C|3828

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain MA

eL41

Chain OA

eL43

Chain ZA

Small subunit ribosomal RNA; SSU rRNA