J4_8VVR_013

3D structure

PDB id

8VVR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8VVR|1|WA|U|3820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVR|1|WA|C|3698
8VVR|1|WA|U|3699
8VVR|1|WA|G|3700
*
8VVR|1|WA|C|3754
8VVR|1|WA|G|3755
*
8VVR|1|WA|C|3773
8VVR|1|WA|U|3774
8VVR|1|WA|U|3775
8VVR|1|WA|A|3776
8VVR|1|WA|A|3777
8VVR|1|WA|G|3778
8VVR|1|WA|G|3779
8VVR|1|WA|U|3780
8VVR|1|WA|A|3781
8VVR|1|WA|G|3782
*
8VVR|1|WA|U|3816
8VVR|1|WA|G|3817
8VVR|1|WA|A|3818
8VVR|1|WA|A|3819
8VVR|1|WA|U|3820
8VVR|1|WA|G|3821

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain MA

eL41

Chain SA

Transfer RNA; tRNA

Chain ZA

Small subunit ribosomal RNA; SSU rRNA