Motif J4_21738.2 Version J4_21738.2 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | break | 16 | 17 | 18 | 19 | 20 | 1-18 | 1-20 | 2-19 | 3-4 | 5-6 | 7-11 | 12-13 | 13-18 | 14-17 | 15-16 | 18-20 | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J4_8OI5_007 | 8OI5 | 0.0668 | 1 | 1 | LSU rRNA | C | 2170 | U | 2171 | G | 2172 | * | C | 2226 | G | 2227 | * | C | 2245 | U | 2246 | U | 2247 | A | 2248 | A | 2249 | G | 2250 | G | 2251 | U | 2252 | A | 2253 | G | 2254 | * | U | 2288 | G | 2289 | A | 2290 | A | 2291 | G | 2293 | tsS | cWW | cWH | cWW | cWW | tSW | cSH | tWH | tHS | cWW | cSs |
| 2 | J4_9SUM_007 | 9SUM | 0.0000 | 1 | A | LSU rRNA | C | 2107 | U | 2108 | G | 2109 | * | C | 2163 | G | 2164 | * | C | 2182 | U | 2183 | U | 2184 | A | 2185 | A | 2186 | G | 2187 | G | 2188 | U | 2189 | A | 2190 | G | 2191 | * | U | 2225 | G | 2226 | A | 2227 | A | 2228 | G | 2230 | tsS | cWW | cWH | cWW | cWW | ntSW | cSH | tWH | tHS | cWW | cSs |
| 3 | J4_8GLP_010 | 8GLP | 0.0625 | 1 | L5 | LSU rRNA | C | 3696 | U | 3697 | G | 3698 | * | C | 3752 | G | 3753 | * | C | 3771 | U | 3772 | U | 3773 | A | 3774 | A | 3775 | G | 3776 | G | 3777 | U | 3778 | A | 3779 | G | 3780 | * | U | 3814 | G | 3815 | A | 3816 | A | 3817 | G | 3819 | tsS | cWW | cWH | cWW | cWW | tSW | cSH | tWH | tHS | cWW | cSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUG*CG*CUUAAGGUAG*UGAAUG | 2 |
| CUG*CG*CUUAAGGUAG*UGAA(UY1)G | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U**UUAAGGUA*GAAU | 2 |
| U**UUAAGGUA*GAA(UY1) | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F
- Heat map statistics
- Min 0.06 | Avg 0.05 | Max 0.08
Coloring options: