J4_8VVS_008

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

8VVS|1|WA|A|2368, 8VVS|1|WA|U|2371, 8VVS|1|WA|U|2830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVS|1|WA|C|2367
8VVS|1|WA|A|2368
8VVS|1|WA|A|2369
8VVS|1|WA|A|2370
8VVS|1|WA|U|2371
8VVS|1|WA|A|2372
8VVS|1|WA|U|2373
*
8VVS|1|WA|A|2391
8VVS|1|WA|G|2392
8VVS|1|WA|G|2393
*
8VVS|1|WA|C|2826
8VVS|1|WA|A|2827
8VVS|1|WA|U|2828
8VVS|1|WA|G|2829
8VVS|1|WA|U|2830
8VVS|1|WA|U|2831
*
8VVS|1|WA|A|3858
8VVS|1|WA|G|3859

Current chains

Chain WA

28S rRNA

Nearby chains

Chain CA

L31

Chain O

uL22

Chain Q

eL19