J4_8VVT_001

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

8VVT|1|WA|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVT|1|WA|C|111
8VVT|1|WA|C|112
*
8VVT|1|WA|G|278
8VVT|1|WA|A|279
8VVT|1|WA|G|280
8VVT|1|WA|U|281
8VVT|1|WA|C|282
8VVT|1|WA|G|283
*
8VVT|1|WA|C|304
8VVT|1|WA|A|305
8VVT|1|WA|A|306
8VVT|1|WA|A|307
8VVT|1|WA|G|308
8VVT|1|WA|C|309
8VVT|1|WA|G|310
*
8VVT|1|WA|U|327
8VVT|1|WA|A|328
8VVT|1|WA|A|329
8VVT|1|WA|G|330

Current chains

Chain WA

28S rRNA

Nearby chains

Chain GA

uL29

Chain HA

L36

Chain K

eL13

Chain M

L15