J4_8VVT_002

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8VVT|1|WA|C|216, 8VVT|1|WA|C|217, 8VVT|1|WA|A|218, 8VVT|1|WA|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVT|1|WA|C|196
8VVT|1|WA|A|197
8VVT|1|WA|A|198
8VVT|1|WA|G|199
*
8VVT|1|WA|C|215
8VVT|1|WA|C|216
8VVT|1|WA|C|217
8VVT|1|WA|A|218
8VVT|1|WA|G|219
8VVT|1|WA|C|220
8VVT|1|WA|C|221
8VVT|1|WA|C|222
*
8VVT|1|WA|G|226
8VVT|1|WA|A|227
8VVT|1|WA|C|228
*
8VVT|1|WA|G|240
8VVT|1|WA|G|241
8VVT|1|WA|U|242
8VVT|1|WA|A|243
8VVT|1|WA|G|244

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain X

L26