J4_8VVT_003

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGGGAG*CGCCGCCG*CACGGGG

Length

24 nucleotides

Bulged bases

8VVT|1|WA|G|964, 8VVT|1|WA|C|978, 8VVT|1|WA|C|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVT|1|WA|C|713
8VVT|1|WA|C|714
*
8VVT|1|WA|G|960
8VVT|1|WA|A|961
8VVT|1|WA|G|962
8VVT|1|WA|G|963
8VVT|1|WA|G|964
8VVT|1|WA|A|965
8VVT|1|WA|G|966
*
8VVT|1|WA|C|976
8VVT|1|WA|G|977
8VVT|1|WA|C|978
8VVT|1|WA|C|979
8VVT|1|WA|G|980
8VVT|1|WA|C|981
8VVT|1|WA|C|982
8VVT|1|WA|G|983
*
8VVT|1|WA|C|1284
8VVT|1|WA|A|1285
8VVT|1|WA|C|1286
8VVT|1|WA|G|1287
8VVT|1|WA|G|1288
8VVT|1|WA|G|1289
8VVT|1|WA|G|1290

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain DA

eL32

Chain E

L6

Chain F

uL30