J4_8VVT_006

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUG*CAGUG*CGACC*GAGGGUGUAAAU

Length

27 nucleotides

Bulged bases

8VVT|1|WA|U|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVT|1|WA|A|2556
8VVT|1|WA|G|2557
8VVT|1|WA|A|2558
8VVT|1|WA|U|2559
8VVT|1|WA|G|2560
*
8VVT|1|WA|C|2577
8VVT|1|WA|A|2578
8VVT|1|WA|G|2579
8VVT|1|WA|U|2580
8VVT|1|WA|G|2581
*
8VVT|1|WA|C|2590
8VVT|1|WA|G|2591
8VVT|1|WA|A|2592
8VVT|1|WA|C|2593
8VVT|1|WA|C|2594
*
8VVT|1|WA|G|2761
8VVT|1|WA|A|2762
8VVT|1|WA|G|2763
8VVT|1|WA|G|2764
8VVT|1|WA|G|2765
8VVT|1|WA|U|2766
8VVT|1|WA|G|2767
8VVT|1|WA|U|2768
8VVT|1|WA|A|2769
8VVT|1|WA|A|2770
8VVT|1|WA|A|2771
8VVT|1|WA|U|2772

Current chains

Chain WA

28S rRNA

Nearby chains

Chain FA

eL34

Chain Y

L27