J4_8VVT_009

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8VVT|1|WA|U|3778, 8VVT|1|WA|U|3823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVT|1|WA|C|3701
8VVT|1|WA|U|3702
8VVT|1|WA|G|3703
*
8VVT|1|WA|C|3757
8VVT|1|WA|G|3758
*
8VVT|1|WA|C|3776
8VVT|1|WA|U|3777
8VVT|1|WA|U|3778
8VVT|1|WA|A|3779
8VVT|1|WA|A|3780
8VVT|1|WA|G|3781
8VVT|1|WA|G|3782
8VVT|1|WA|U|3783
8VVT|1|WA|A|3784
8VVT|1|WA|G|3785
*
8VVT|1|WA|U|3819
8VVT|1|WA|G|3820
8VVT|1|WA|A|3821
8VVT|1|WA|A|3822
8VVT|1|WA|U|3823
8VVT|1|WA|G|3824

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

L8

Chain MA

eL41

Chain ZA

Small subunit ribosomal RNA; SSU rRNA