J4_8VVT_012
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 8VVT|1|ZA|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VVT_012 not in the Motif Atlas
- Homologous match to J4_9PN5_010
- Geometric discrepancy: 0.1497
- The information below is about J4_9PN5_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.5
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
8VVT|1|ZA|C|98
8VVT|1|ZA|A|99
8VVT|1|ZA|U|100
8VVT|1|ZA|U|101
8VVT|1|ZA|A|102
8VVT|1|ZA|A|103
8VVT|1|ZA|A|104
8VVT|1|ZA|U|105
8VVT|1|ZA|C|106
*
8VVT|1|ZA|G|355
8VVT|1|ZA|C|356
8VVT|1|ZA|C|357
*
8VVT|1|ZA|G|405
8VVT|1|ZA|U|406
8VVT|1|ZA|G|407
8VVT|1|ZA|A|408
8VVT|1|ZA|C|409
*
8VVT|1|ZA|G|431
8VVT|1|ZA|G|432
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain EB
- eS4
- Chain IB
- eS8
- Chain LB
- S11
- Chain XB
- uS12
Coloring options: