J4_8VVT_012

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

8VVT|1|ZA|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVT|1|ZA|C|98
8VVT|1|ZA|A|99
8VVT|1|ZA|U|100
8VVT|1|ZA|U|101
8VVT|1|ZA|A|102
8VVT|1|ZA|A|103
8VVT|1|ZA|A|104
8VVT|1|ZA|U|105
8VVT|1|ZA|C|106
*
8VVT|1|ZA|G|355
8VVT|1|ZA|C|356
8VVT|1|ZA|C|357
*
8VVT|1|ZA|G|405
8VVT|1|ZA|U|406
8VVT|1|ZA|G|407
8VVT|1|ZA|A|408
8VVT|1|ZA|C|409
*
8VVT|1|ZA|G|431
8VVT|1|ZA|G|432

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

eS4

Chain IB

eS8

Chain LB

S11

Chain XB

uS12