J4_8VVU_002

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAG*CAU*AAGGUCC*GC

Length

16 nucleotides

Bulged bases

8VVU|1|SA|U|8, 8VVU|1|SA|U|47, 8VVU|1|SA|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVU|1|SA|G|7
8VVU|1|SA|U|8
8VVU|1|SA|A|9
8VVU|1|SA|G|10
*
8VVU|1|SA|C|25
8VVU|1|SA|A|26
8VVU|1|SA|U|27
*
8VVU|1|SA|A|43
8VVU|1|SA|A|44
8VVU|1|SA|G|45
8VVU|1|SA|G|46
8VVU|1|SA|U|47
8VVU|1|SA|C|48
8VVU|1|SA|C|49
*
8VVU|1|SA|G|65
8VVU|1|SA|C|66

Current chains

Chain SA

P-site tRNA

Nearby chains

Chain I

L10

Chain J

uL5

Chain WA

Large subunit ribosomal RNA; LSU rRNA

Chain ZA

Small subunit ribosomal RNA; SSU rRNA

Chain ZB

eS25