J4_8VVU_004

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

8VVU|1|WA|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVU|1|WA|C|111
8VVU|1|WA|C|112
*
8VVU|1|WA|G|278
8VVU|1|WA|A|279
8VVU|1|WA|G|280
8VVU|1|WA|U|281
8VVU|1|WA|C|282
8VVU|1|WA|G|283
*
8VVU|1|WA|C|304
8VVU|1|WA|A|305
8VVU|1|WA|A|306
8VVU|1|WA|A|307
8VVU|1|WA|G|308
8VVU|1|WA|C|309
8VVU|1|WA|G|310
*
8VVU|1|WA|U|327
8VVU|1|WA|A|328
8VVU|1|WA|A|329
8VVU|1|WA|G|330

Current chains

Chain WA

28S rRNA

Nearby chains

Chain GA

L35

Chain HA

L36

Chain K

eL13

Chain M

L15