J4_8VVU_005

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

8VVU|1|WA|C|216, 8VVU|1|WA|C|217, 8VVU|1|WA|A|218, 8VVU|1|WA|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVU|1|WA|C|196
8VVU|1|WA|A|197
8VVU|1|WA|A|198
8VVU|1|WA|G|199
*
8VVU|1|WA|C|215
8VVU|1|WA|C|216
8VVU|1|WA|C|217
8VVU|1|WA|A|218
8VVU|1|WA|G|219
8VVU|1|WA|C|220
8VVU|1|WA|C|221
8VVU|1|WA|C|222
*
8VVU|1|WA|G|226
8VVU|1|WA|A|227
8VVU|1|WA|C|228
*
8VVU|1|WA|G|240
8VVU|1|WA|G|241
8VVU|1|WA|U|242
8VVU|1|WA|A|243
8VVU|1|WA|G|244

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain X

L26