J4_8VVU_006

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAGGGAG*CGCGCCGG*CACGGGG

Length

24 nucleotides

Bulged bases

8VVU|1|WA|G|964, 8VVU|1|WA|C|978, 8VVU|1|WA|G|982, 8VVU|1|WA|C|1282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVU|1|WA|C|713
8VVU|1|WA|C|714
*
8VVU|1|WA|G|960
8VVU|1|WA|A|961
8VVU|1|WA|G|962
8VVU|1|WA|G|963
8VVU|1|WA|G|964
8VVU|1|WA|A|965
8VVU|1|WA|G|966
*
8VVU|1|WA|C|976
8VVU|1|WA|G|977
8VVU|1|WA|C|978
8VVU|1|WA|G|979
8VVU|1|WA|C|980
8VVU|1|WA|C|981
8VVU|1|WA|G|982
8VVU|1|WA|G|983
*
8VVU|1|WA|C|1280
8VVU|1|WA|A|1281
8VVU|1|WA|C|1282
8VVU|1|WA|G|1283
8VVU|1|WA|G|1284
8VVU|1|WA|G|1285
8VVU|1|WA|G|1286

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain DA

L32

Chain E

L6

Chain F

uL30