J4_8VVV_001

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUCG*CAAAGCG*UAAG

Length

19 nucleotides

Bulged bases

8VVV|1|5|C|309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|5|C|111
8VVV|1|5|C|112
*
8VVV|1|5|G|278
8VVV|1|5|A|279
8VVV|1|5|G|280
8VVV|1|5|U|281
8VVV|1|5|C|282
8VVV|1|5|G|283
*
8VVV|1|5|C|304
8VVV|1|5|A|305
8VVV|1|5|A|306
8VVV|1|5|A|307
8VVV|1|5|G|308
8VVV|1|5|C|309
8VVV|1|5|G|310
*
8VVV|1|5|U|327
8VVV|1|5|A|328
8VVV|1|5|A|329
8VVV|1|5|G|330

Current chains

Chain 5

28S rRNA

Nearby chains

Chain L

eL13

Chain N

eL15

Chain h

uL29

Chain i

eL36