J4_8VVV_003

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(OMC)AAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

8VVV|1|5|A|2372, 8VVV|1|5|U|2375, 8VVV|1|5|U|2834

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|5|OMC|2371
8VVV|1|5|A|2372
8VVV|1|5|A|2373
8VVV|1|5|A|2374
8VVV|1|5|U|2375
8VVV|1|5|A|2376
8VVV|1|5|U|2377
*
8VVV|1|5|A|2395
8VVV|1|5|G|2396
8VVV|1|5|G|2397
*
8VVV|1|5|C|2830
8VVV|1|5|A|2831
8VVV|1|5|U|2832
8VVV|1|5|G|2833
8VVV|1|5|U|2834
8VVV|1|5|U|2835
*
8VVV|1|5|A|3862
8VVV|1|5|G|3863

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31