J4_8VVV_005

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

8VVV|1|5|A|2702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|5|G|2624
8VVV|1|5|G|2625
*
8VVV|1|5|U|2643
8VVV|1|5|G|2644
8VVV|1|5|U|2645
8VVV|1|5|G|2646
8VVV|1|5|A|2647
8VVV|1|5|A|2648
*
8VVV|1|5|U|2698
8VVV|1|5|G|2699
8VVV|1|5|G|2700
8VVV|1|5|A|2701
8VVV|1|5|A|2702
8VVV|1|5|A|2703
8VVV|1|5|G|2704
*
8VVV|1|5|U|2724
8VVV|1|5|C|2725

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

eL19

Chain U

eL22

Chain g

eL34

Chain k

eL38