J4_8VVV_009
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAA*(OMU)C*GUG*CGCC
- Length
- 13 nucleotides
- Bulged bases
- 8VVV|1|5|A|4595, 8VVV|1|5|U|4683
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8VVV_009 not in the Motif Atlas
- Homologous match to J4_8GLP_013
- Geometric discrepancy: 0.1174
- The information below is about J4_8GLP_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69783.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8VVV|1|5|G|4593
8VVV|1|5|U|4594
8VVV|1|5|A|4595
8VVV|1|5|A|4596
*
8VVV|1|5|OMU|4626
8VVV|1|5|C|4627
*
8VVV|1|5|G|4682
8VVV|1|5|U|4683
8VVV|1|5|G|4684
*
8VVV|1|5|C|4718
8VVV|1|5|G|4719
8VVV|1|5|C|4720
8VVV|1|5|C|4721
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain O
- uL13
- Chain V
- L23
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