J4_8VVV_009

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAA*(OMU)C*GUG*CGCC

Length

13 nucleotides

Bulged bases

8VVV|1|5|A|4595, 8VVV|1|5|U|4683

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|5|G|4593
8VVV|1|5|U|4594
8VVV|1|5|A|4595
8VVV|1|5|A|4596
*
8VVV|1|5|OMU|4626
8VVV|1|5|C|4627
*
8VVV|1|5|G|4682
8VVV|1|5|U|4683
8VVV|1|5|G|4684
*
8VVV|1|5|C|4718
8VVV|1|5|G|4719
8VVV|1|5|C|4720
8VVV|1|5|C|4721

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13

Chain V

L23