J4_8VVV_010

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUUAAAUC*GCC*GUGAC*GG

Length

19 nucleotides

Bulged bases

8VVV|1|9|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|9|C|98
8VVV|1|9|A|99
8VVV|1|9|U|100
8VVV|1|9|U|101
8VVV|1|9|A|102
8VVV|1|9|A|103
8VVV|1|9|A|104
8VVV|1|9|U|105
8VVV|1|9|C|106
*
8VVV|1|9|G|355
8VVV|1|9|C|356
8VVV|1|9|C|357
*
8VVV|1|9|G|405
8VVV|1|9|U|406
8VVV|1|9|G|407
8VVV|1|9|A|408
8VVV|1|9|C|409
*
8VVV|1|9|G|431
8VVV|1|9|G|432

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain II

eS8

Chain LL

uS17

Chain XX

uS12