J4_8VWQ_012

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8VWQ|1|2|C|183, 8VWQ|1|2|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VWQ|1|2|G|142
8VWQ|1|2|A|143
8VWQ|1|2|G|144
*
8VWQ|1|2|C|178
8VWQ|1|2|A|179
8VWQ|1|2|U|180
8VWQ|1|2|A|181
8VWQ|1|2|A|182
8VWQ|1|2|C|183
8VWQ|1|2|G|184
*
8VWQ|1|2|C|193
8VWQ|1|2|C|194
8VWQ|1|2|A|195
8VWQ|1|2|A|196
8VWQ|1|2|A|197
8VWQ|1|2|G|198
*
8VWQ|1|2|U|219
8VWQ|1|2|G|220
8VWQ|1|2|C|221

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20