J4_8WHX_005

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UC*GGUGAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

8WHX|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WHX_005 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.0932

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8WHX|1|A|U|1428
8WHX|1|A|C|1429
*
8WHX|1|A|G|1453
8WHX|1|A|G|1454
8WHX|1|A|U|1455
8WHX|1|A|G|1456
8WHX|1|A|A|1457
8WHX|1|A|G|1458
*
8WHX|1|A|C|1519
8WHX|1|A|C|1520
*
8WHX|1|A|G|1815
8WHX|1|A|C|1816
8WHX|1|A|C|1817
8WHX|1|A|C|1818
8WHX|1|A|G|1819
8WHX|1|A|U|1820
8WHX|1|A|A|1821

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23