J4_8WHY_008

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

8WHY|1|A|U|2195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WHY_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0811

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8WHY|1|A|C|2050
8WHY|1|A|U|2051
8WHY|1|A|G|2052
*
8WHY|1|A|C|2129
8WHY|1|A|G|2130
*
8WHY|1|A|C|2148
8WHY|1|A|C|2149
8WHY|1|A|U|2150
8WHY|1|A|A|2151
8WHY|1|A|A|2152
8WHY|1|A|G|2153
8WHY|1|A|G|2154
8WHY|1|A|U|2155
8WHY|1|A|A|2156
8WHY|1|A|G|2157
*
8WHY|1|A|C|2191
8WHY|1|A|G|2192
8WHY|1|A|A|2193
8WHY|1|A|A|2194
8WHY|1|A|U|2195
8WHY|1|A|G|2196

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2