J4_8WHY_010
3D structure
- PDB id
- 8WHY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AACC*GAC*GGACA*UCU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8WHY_010 not in the Motif Atlas
- Homologous match to J4_4WF9_009
- Geometric discrepancy: 0.1124
- The information below is about J4_4WF9_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.5
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8WHY|1|A|A|2867
8WHY|1|A|A|2868
8WHY|1|A|C|2869
8WHY|1|A|C|2870
*
8WHY|1|A|G|2898
8WHY|1|A|A|2899
8WHY|1|A|C|2900
*
8WHY|1|A|G|2955
8WHY|1|A|G|2956
8WHY|1|A|A|2957
8WHY|1|A|C|2958
8WHY|1|A|A|2959
*
8WHY|1|A|U|2993
8WHY|1|A|C|2994
8WHY|1|A|U|2995
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain F
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L13
- Chain N
- 50S ribosomal protein L14
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