J4_8WI9_002
3D structure
- PDB id
- 8WI9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUU*AAUACAC*GGAAAG*CGG
- Length
- 19 nucleotides
- Bulged bases
- 8WI9|1|a|C|179, 8WI9|1|a|A|180, 8WI9|1|a|A|211
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8WI9_002 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.4356
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8WI9|1|a|C|139
8WI9|1|a|U|140
8WI9|1|a|U|141
*
8WI9|1|a|A|175
8WI9|1|a|A|176
8WI9|1|a|U|177
8WI9|1|a|A|178
8WI9|1|a|C|179
8WI9|1|a|A|180
8WI9|1|a|C|181
*
8WI9|1|a|G|207
8WI9|1|a|G|208
8WI9|1|a|A|209
8WI9|1|a|A|210
8WI9|1|a|A|211
8WI9|1|a|G|212
*
8WI9|1|a|C|219
8WI9|1|a|G|220
8WI9|1|a|G|221
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain r
- 30S ribosomal protein S17
- Chain u
- 30S ribosomal protein S20
Coloring options: