J4_8WIC_003

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUUAG*CC*GUAC*GG

Length

15 nucleotides

Bulged bases

8WIC|1|A|G|1386, 8WIC|1|A|U|1389, 8WIC|1|A|A|1390

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WIC_003 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.4398

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8WIC|1|A|C|1385
8WIC|1|A|G|1386
8WIC|1|A|A|1387
8WIC|1|A|U|1388
8WIC|1|A|U|1389
8WIC|1|A|A|1390
8WIC|1|A|G|1391
*
8WIC|1|A|C|1409
8WIC|1|A|C|1410
*
8WIC|1|A|G|1863
8WIC|1|A|U|1864
8WIC|1|A|A|1865
8WIC|1|A|C|1866
*
8WIC|1|A|G|2233
8WIC|1|A|G|2234

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain Q

50S ribosomal protein L17

Chain V

50S ribosomal protein L22