J4_8WV1_003

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

8WV1|1|A|U|1387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8WV1_003 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.1468

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8WV1|1|A|G|1356
8WV1|1|A|G|1357
8WV1|1|A|U|1358
8WV1|1|A|U|1359
8WV1|1|A|C|1360
*
8WV1|1|A|G|1384
8WV1|1|A|G|1385
8WV1|1|A|U|1386
8WV1|1|A|U|1387
8WV1|1|A|A|1388
8WV1|1|A|G|1389
*
8WV1|1|A|C|1450
8WV1|1|A|U|1451
*
8WV1|1|A|A|1643
8WV1|1|A|C|1644
8WV1|1|A|C|1645
8WV1|1|A|C|1646
8WV1|1|A|G|1647
8WV1|1|A|U|1648
8WV1|1|A|A|1649
8WV1|1|A|C|1650

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain S

50S ribosomal protein L23