J4_8WV1_017

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

CUAAAC*GGGUCG*CUG*UAAG

Length

19 nucleotides

Bulged bases

8WV1|1|a|C|286, 8WV1|1|a|U|432

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WV1|1|a|C|257
8WV1|1|a|U|258
8WV1|1|a|A|259
8WV1|1|a|A|260
8WV1|1|a|A|261
8WV1|1|a|C|262
*
8WV1|1|a|G|282
8WV1|1|a|G|283
8WV1|1|a|G|284
8WV1|1|a|U|285
8WV1|1|a|C|286
8WV1|1|a|G|287
*
8WV1|1|a|C|431
8WV1|1|a|U|432
8WV1|1|a|G|433
*
8WV1|1|a|U|448
8WV1|1|a|A|449
8WV1|1|a|A|450
8WV1|1|a|G|451

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28