J4_8XSX_001

3D structure

PDB id

8XSX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGG*UGC*GAGGUCG*CC

Length

16 nucleotides

Bulged bases

8XSX|1|CC|U|8, 8XSX|1|CC|U|46, 8XSX|1|CC|C|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8XSX_001 not in the Motif Atlas

Homologous match to J4_4V9Q_031

Geometric discrepancy: 0.2695

The information below is about J4_4V9Q_031

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_58311.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

30

Unit IDs

8XSX|1|CC|G|7
8XSX|1|CC|U|8
8XSX|1|CC|G|9
8XSX|1|CC|G|10
*
8XSX|1|CC|U|24
8XSX|1|CC|G|25
8XSX|1|CC|C|26
*
8XSX|1|CC|G|42
8XSX|1|CC|A|43
8XSX|1|CC|G|44
8XSX|1|CC|G|45
8XSX|1|CC|U|46
8XSX|1|CC|C|47
8XSX|1|CC|G|48
*
8XSX|1|CC|C|64
8XSX|1|CC|C|65

Current chains

Chain CC

E-tRNA

Nearby chains

Chain Lo

60S ribosomal protein L36a