J4_8XT3_003

3D structure

PDB id

8XT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 39S mitoribosome with 10uM Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCUG*CAUCAC*GCACCG*CUCCAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8XT3|1|L1|G|822
8XT3|1|L1|C|823
8XT3|1|L1|C|824
8XT3|1|L1|U|825
8XT3|1|L1|G|826
*
8XT3|1|L1|C|838
8XT3|1|L1|A|839
8XT3|1|L1|U|840
8XT3|1|L1|C|841
8XT3|1|L1|A|842
8XT3|1|L1|C|843
*
8XT3|1|L1|G|867
8XT3|1|L1|C|868
8XT3|1|L1|A|869
8XT3|1|L1|C|870
8XT3|1|L1|C|871
8XT3|1|L1|G|872
*
8XT3|1|L1|C|967
8XT3|1|L1|U|968
8XT3|1|L1|C|969
8XT3|1|L1|C|970
8XT3|1|L1|A|971
8XT3|1|L1|C|972

Current chains

Chain L1

16s rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL2m