J4_8XU8_004
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUAUG*CGUC*GAG*CGUGUG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8XU8_004 not in the Motif Atlas
- Homologous match to J4_8P9A_013
- Geometric discrepancy: 0.1758
- The information below is about J4_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_43318.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8XU8|1|A|C|185
8XU8|1|A|U|186
8XU8|1|A|A|187
8XU8|1|A|U|188
8XU8|1|A|G|189
*
8XU8|1|A|C|205
8XU8|1|A|G|206
8XU8|1|A|U|207
8XU8|1|A|C|208
*
8XU8|1|A|G|212
8XU8|1|A|A|213
8XU8|1|A|G|214
*
8XU8|1|A|C|226
8XU8|1|A|G|227
8XU8|1|A|U|228
8XU8|1|A|G|229
8XU8|1|A|U|230
8XU8|1|A|G|231
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL4A
- Chain a
- Large ribosomal subunit protein uL24A
Coloring options: