J4_8XU8_014
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8XU8|1|A|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8XU8_014 not in the Motif Atlas
- Homologous match to J4_8CRE_007
- Geometric discrepancy: 0.1593
- The information below is about J4_8CRE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_63658.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F
- Number of instances in this motif group
- 1
Unit IDs
8XU8|1|A|C|2192
8XU8|1|A|U|2193
8XU8|1|A|G|2194
*
8XU8|1|A|C|2248
8XU8|1|A|G|2249
*
8XU8|1|A|C|2267
8XU8|1|A|U|2268
8XU8|1|A|U|2269
8XU8|1|A|A|2270
8XU8|1|A|A|2271
8XU8|1|A|G|2272
8XU8|1|A|G|2273
8XU8|1|A|U|2274
8XU8|1|A|A|2275
8XU8|1|A|G|2276
*
8XU8|1|A|U|2310
8XU8|1|A|G|2311
8XU8|1|A|A|2312
8XU8|1|A|A|2313
8XU8|1|A|U|2314
8XU8|1|A|G|2315
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain D
- Large ribosomal subunit protein uL2A
- Chain p
- Large ribosomal subunit protein eL41A
- Chain t
- Transfer RNA; tRNA
Coloring options: