J4_8XU8_015
3D structure
- PDB id
- 8XU8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 2c(S2c) of yeast 80S ribosome bound to compact eEF2 and 2 tRNAs during peptidyl transferation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 8XU8|1|A|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8XU8_015 not in the Motif Atlas
- Homologous match to J4_8CRE_008
- Geometric discrepancy: 0.1655
- The information below is about J4_8CRE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8XU8|1|A|C|2654
8XU8|1|A|U|2655
8XU8|1|A|A|2656
8XU8|1|A|A|2657
8XU8|1|A|G|2658
*
8XU8|1|A|U|2712
8XU8|1|A|U|2713
8XU8|1|A|G|2714
8XU8|1|A|A|2715
8XU8|1|A|U|2716
*
8XU8|1|A|A|2740
8XU8|1|A|C|2741
8XU8|1|A|C|2742
*
8XU8|1|A|G|2751
8XU8|1|A|U|2752
8XU8|1|A|G|2753
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain G
- Large ribosomal subunit protein uL18
- Chain V
- Large ribosomal subunit protein eL21A
- Chain d
- Large ribosomal subunit protein eL29
- Chain q
- Large ribosomal subunit protein eL42A
Coloring options: