J4_8XZ3_005
3D structure
- PDB id
- 8XZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mycobacterium smegmatis 50S ribosomal subunit with Erythromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UC*GGUGAG*CC*GCCCGUA
- Length
- 17 nucleotides
- Bulged bases
- 8XZ3|1|A|G|1456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8XZ3_005 not in the Motif Atlas
- Homologous match to J4_4WF9_006
- Geometric discrepancy: 0.1056
- The information below is about J4_4WF9_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.1
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
8XZ3|1|A|U|1428
8XZ3|1|A|C|1429
*
8XZ3|1|A|G|1453
8XZ3|1|A|G|1454
8XZ3|1|A|U|1455
8XZ3|1|A|G|1456
8XZ3|1|A|A|1457
8XZ3|1|A|G|1458
*
8XZ3|1|A|C|1519
8XZ3|1|A|C|1520
*
8XZ3|1|A|G|1815
8XZ3|1|A|C|1816
8XZ3|1|A|C|1817
8XZ3|1|A|C|1818
8XZ3|1|A|G|1819
8XZ3|1|A|U|1820
8XZ3|1|A|A|1821
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain U
- Large ribosomal subunit protein uL23
Coloring options: