J4_8Y0U_009
3D structure
- PDB id
- 8Y0U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- dormant ribosome with STM1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.59 Å
Loop
- Sequence
- UAA*UC*GCU*AUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8Y0U_009 not in the Motif Atlas
- Homologous match to J4_8P9A_020
- Geometric discrepancy: 0.0997
- The information below is about J4_8P9A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_65356.1
- Basepair signature
- cWW-tSS-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8Y0U|1|C1|U|3010
8Y0U|1|C1|A|3011
8Y0U|1|C1|A|3012
*
8Y0U|1|C1|U|3042
8Y0U|1|C1|C|3043
*
8Y0U|1|C1|G|3098
8Y0U|1|C1|C|3099
8Y0U|1|C1|U|3100
*
8Y0U|1|C1|A|3134
8Y0U|1|C1|U|3135
8Y0U|1|C1|G|3136
Current chains
- Chain C1
- 25S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LO
- Large ribosomal subunit protein uL13A
- Chain LV
- Large ribosomal subunit protein uL14A
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