J4_8Y0X_005
3D structure
- PDB id
- 8Y0X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dormant ribosome with SERBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8Y0X|1|L5|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8Y0X_005 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0898
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8Y0X|1|L5|G|2406
8Y0X|1|L5|G|2407
8Y0X|1|L5|U|2408
8Y0X|1|L5|U|2409
8Y0X|1|L5|C|2410
*
8Y0X|1|L5|G|2434
8Y0X|1|L5|G|2435
8Y0X|1|L5|U|2436
8Y0X|1|L5|C|2437
8Y0X|1|L5|A|2438
8Y0X|1|L5|G|2439
*
8Y0X|1|L5|U|2538
8Y0X|1|L5|C|2539
*
8Y0X|1|L5|G|2777
8Y0X|1|L5|G|2778
8Y0X|1|L5|C|2779
8Y0X|1|L5|C|2780
8Y0X|1|L5|G|2781
8Y0X|1|L5|U|2782
8Y0X|1|L5|A|2783
8Y0X|1|L5|C|2784
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LR
- 60S ribosomal protein L19
- Chain LX
- 60S ribosomal protein L23a
- Chain Lg
- 60S ribosomal protein L34
- Chain Lj
- 60S ribosomal protein L37
- Chain Lk
- 60S ribosomal protein L38
- Chain Ll
- 60S ribosomal protein L39
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